PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004516755.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 329aa    MW: 37787 Da    PI: 5.0659
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004516755.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12143189455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+ i ++f  L  ++P +     k+ +Ka iL++A++Y+k+Lq
  XP_004516755.2 143 DHILAERKRRQVITERFIALSAIIPGL-----KRTDKAYILREAINYVKQLQ 189
                     6999***********************.....89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.888139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-16142202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9143189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15143200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.36E-10144193No hitNo description
SMARTSM003531.1E-12145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEDLWEKWFS SLEMDGDKSP YLDEDMFLVD NMEQTNFFLE SANSNINIDN VCVTTIQENM  60
LNNSNTSNSL ISQEYNYASN SQQEPSQYIL SFEKSIVELS PNSAIATCSS IMGQKTTLNN  120
NVSELPKAKE RTKSFRSSSE TQDHILAERK RRQVITERFI ALSAIIPGLK RTDKAYILRE  180
AINYVKQLQE KVKDLENPNK MKKGDSLIFI KNSQASTTEE TTSCEEKIDN SKKELPKVEA  240
RVIEKEILIE IHCEKQKDIV VRLMVLLQNL HLSLACSSVL PFGNSILKVT IIAQMNDEYC  300
MTMNDLVKTL RQDLLESHDN QKYIFKRVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1828173e-52AC182817.35 Medicago truncatula chromosome 8 clone mth2-179d15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004516755.20.0PREDICTED: transcription factor bHLH18-like
TrEMBLG7LCK71e-131G7LCK7_MEDTR; Helix loop helix DNA-binding domain protein
STRINGGLYMA07G13511.16e-97(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14989811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-42bHLH family protein